| Date |
Announcements |
|
| 5/4/2007 |
Today's office hours are
moved to Monday (5/7), 3:00pm-5:00pm.
|
|
| 4/18/2007 |
Project presentations (10
credits) will be scheduled to be on 4/26, 5/1 and 5/3. Larger
groups will have a larger probability to be chosen for presenting on
an earlier date.
|
|
| 4/12/2007 |
An one-page report of project progress is due on
4/17. The report will account for 5 credits (out
of 45 credits of the project).
The final project report will be due on 5/10.
Please follow the submission instruction here.
|
|
| 3/23/2007 |
More papers on Bayesian Network and Gene
Regulation are added into the Reading
List. We need 4 volunteers
to present them in class.
|
|
| 3/20/2007 |
Glad to see all of you
again after the break!
Paper summary of outer
membrane protein prediction is due on 3/29.
The class survey has been sent out. Any comments and suggestions
are very welcome.
|
|
| 3/7/2007 |
We will have a shorter class with two
presentaions. Lakshmi Naarayanan will mentor the class.
|
|
| 3/1/2007 |
Due to the snow storm, the class is canceled .
|
|
| 2/11/2007 |
More papers on the SVM applications are added to the Reading
List. We need 7-9
volunteers to present them in class. Please email me to
confirm.
HW1 and HW2 are graded. Your grades have been
distributed to you through
email.
Project groups will be finalized before Tuesday 2/13. Email your preferences ASAP if you haven't
done
it.
|
|
| 1/28/2007 |
More papers are added to the Reading
List
.
Project ideas are posted on the Project
page. Email me your top-3 preferences.
Paper summary of Semi-supervised
learning with Network Diffusion is due on Tuesday, 2/6.
|
|
| 1/23/2007 |
The lecture notes are online. We will have Dr. John Carlis give us
a 30-minute guest lecture on Thursday.
|
|
| 1/21/2007 |
Three more papers on spectral clustering and network
diffusion are listed in the Reading
List as additional reading. We need three volunteers to present them in class (20~25 minutes) on 1/30, 2/1
and 2/6. Please email me to confirm.
A list of reference books is added into
the Reading
List.
RankProp is
available here via UCSC Gene Sorter. In the "sort by"
listbox, select "Protein Homology - RankProp".
|
|
| 1/18/2007 |
Glad to see you again!
The notes of the second lecture are online. I will have my first office-hour section
tomorrow in my office (5-215 EE/CS
Building).
|
|
| 1/16/2007 |
Pleased to meet all of you in the first class!
The first lecture notes are online in the
schedule page. The paper summary of RankProp paper is due on next
Tuesday (Jan 23)
before class.
|
|
| 1/16/2007 |
Welcome! The first day of the class. We will start with a brief
introduction to the course. To show why Machine Learning is important in
Computational Biology, we will then discuss Network Diffusion
algorithms, which are used to improve protein database search over classic
alignment-based algorithms.
The paper list is now availabe here. More papers will be added as the
class goes on.
The class schedule is availabe here. The reading list will be given before
class, and class notes will be posted after each lecture.
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